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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2540567_2542036_F

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
2540567 - 2542036
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
GACTTAGTTCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
TTTTCCTTGACT
Flanking Amino Acid:
DFKISGVNGSHICMVFEVLG
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
68.8
0.42
1
58.3
46.2
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
94.4
1.48
0.6
103.7
17.4

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737
ENSAPLT00000040175
2536803 - 2551298
14496
ENSAPLT00000035176
2536818 - 2551866
15049
ENSAPLT00000029523
2527863 - 2551298
23436