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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2544051_2544546_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2544051 - 2544546
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TGCTTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
ACTAAGTCAAAT
Flanking Amino Acid:
AVSTAPQPKPADKMSKNKKK
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
73.3
0.52
0.9
69.3
36.9
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
40.3
-0.6
2.3
57.97
44.2

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029523
2527863 - 2551298
23436
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737
ENSAPLT00000040175
2536803 - 2551298
14496
ENSAPLT00000035176
2536818 - 2551866
15049