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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2544761_2545028_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2544761 - 2545028
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCCGCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTGTTTAGACA
Flanking Amino Acid:
PPDEDAGKKTAEVIVHEQSI
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
78.7
0.65
0.8
72.4
32.3
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
52.4
0.07
1.8
68.82
38.3

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029523
2527863 - 2551298
23436
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737
ENSAPLT00000040175
2536803 - 2551298
14496
ENSAPLT00000035176
2536818 - 2551866
15049