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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2549452_2549889_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2549452 - 2549889
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGAAAAAATGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTCTTTTGAAAA
Flanking Amino Acid:
HSGEDYSRDEDHIALIIELL
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
54.5
0.1
1.1
45.5
44.5
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
51.3
0.04
1.5
60.4
40

Associated Gene:

Gene:
SRPK1
Ensembl Gene ID:
ENSAPLG00000003371
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029523
2527863 - 2551298
23436
ENSAPLT00000003474
2527863 - 2551866
24004
ENSAPLT00000045176
2534130 - 2551866
17737
ENSAPLT00000040175
2536803 - 2551298
14496
ENSAPLT00000035176
2536818 - 2551866
15049