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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2554510_2554818_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2554510 - 2554818
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
LPSDFKVESKEEGND*
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
LHFPL5
Ensembl Gene ID:
ENSAPLG00000028023
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041681
2554479 - 2558215
3737