Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2555056_2557142_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2555056 - 2557142

Intron Length:

2087

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTGCAC

U12 Branch Point Sequence:

CGTGCAGTACCT

Flanking Amino Acid:

KVCAWMQLAAATGLMIGCLI

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

46.1

-0.2

1.4

54.6

40.8

Major PPT

78.4

0.64

0.7

26.1

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

41.2

-0.5

2.4

61.23

48.2

Associated Gene:

Gene:

LHFPL5

Ensembl Gene ID:

ENSAPLG00000028023

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041681

2554479 - 2558215

3737