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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2559721_2560051_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2559721 - 2560051
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCGCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
GGGCTCACACCT
Flanking Amino Acid:
SLERGLIFNLDTGELCLQSA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
71.6
0.49
0.9
64.8
36.4
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
39.7
-0.7
1.9
52.09
42

Associated Gene:

Gene:
CLPS
Ensembl Gene ID:
ENSAPLG00000003624
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003696
2559625 - 2560411
787