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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2561740_2562114_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2561740 - 2562114
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAACCCC
5'SS Class:
weak_major
3'SS Sequence:
AGCCCACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
CCCTCCAGAAGC
Flanking Amino Acid:
PPCLSFPSCGTPEHIELVAS
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.3
50
41.1
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
64.3
0.32
0.9
55.4
34.7
Minor 5ss
34.4
-1.8
3.1
42
38.1
Minor BPS
44.5
-0.4
2
51.55
45.4

Associated Gene:

Gene:
ARMC12
Ensembl Gene ID:
ENSAPLG00000024833
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039775
2560727 - 2562344
1618