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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2585503_2585764_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2585503 - 2585764
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGCAA
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCCCCTGCCT
Flanking Amino Acid:
AEGAPAAPGELCCSSPGTMT
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
63.6
37.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.1
0.54
0.8
65.3
36.2
Minor 5ss
30.7
-2.2
3.2
37.4
47.3
Minor BPS
44.3
-0.3
3.6
81.96
39.3

Associated Gene:

Gene:
FKBP5
Ensembl Gene ID:
ENSAPLG00000003627
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003745
2585148 - 2596751
11604