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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_258744_258864_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
258744 - 258864
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
TTTCTTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
TCCTGGCTAACT
Flanking Amino Acid:
VVLALSEGFTKLPLERGKKL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.2
38
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
78
0.63
1
72.8
42.2
Minor 5ss
34.9
-1.7
3.1
44.6
36.5
Minor BPS
44.3
-0.3
2.6
67.94
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015831
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016539
258688 - 262103
3416