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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2603258_2603516_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2603258 - 2603516
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
GGCCTTGCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGAAG
U12 Branch Point Sequence:
GGCCTTGCAACA
Flanking Amino Acid:
KKGKGKKSKKKEERPPSPVI
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
43.4
-0.4
1.7
53
41.4
Major PPT
60.2
0.23
1
53.9
40.4
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
40.4
-0.7
2
45.8
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030544
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024268
2602040 - 2604619
2580