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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_260368_260673_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
260368 - 260673
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATGCATCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATG
Flanking Amino Acid:
EQNLFSVYLSCETMGSVVIF
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
65.6
0.35
1
55.6
44.1
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
60.7
0.19
1.7
68.66
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015831
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016539
258688 - 262103
3416