About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_260788_261271_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
260788 - 261271
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAG
U12 Branch Point Sequence:
TTTTCCCTCCCT
Flanking Amino Acid:
YQGYWQISMDSIIVNGQEIA
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
47.3
-0.1
1.7
63.4
44.3
Major PPT
67.9
0.4
1
60.8
40.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
43.5
-0.4
3.8
84.58
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015831
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016539
258688 - 262103
3416