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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_261417_261673_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
261417 - 261673
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGCTTCTTACCT
Flanking Amino Acid:
IGARQNTYGEYNVNCSYISA
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
76.3
0.59
0.8
69.7
31
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
66.7
0.6
1.6
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015831
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016539
258688 - 262103
3416