Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2615936_2616006_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2615936 - 2616006

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCGG

5'SS Class:

major

3'SS Sequence:

TCTTTCTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCTT

U12 Branch Point Sequence:

CTTTCTTTCTCT

Flanking Amino Acid:

FRGLNRIQTQGLPLERGDGC

Intron Amino Acid Position:

1108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.8

0.37

1.2

48.2

47.5

Major BPS

37.5

-0.7

4.3

79.6

35.6

Major PPT

88.6

0.87

0.7

81.1

30.9

Minor 5ss

29.1

-2.4

3.4

39.2

Minor BPS

-0.3

3.6

79.06

43.7

Associated Gene:

Gene:

ATP2B4

Ensembl Gene ID:

ENSAPLG00000012830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013459

2615786 - 2630576

14791