Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2616528_2616875_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2616528 - 2616875

Intron Length:

348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCCG

5'SS Class:

strong_major

3'SS Sequence:

CCCTGTGCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

TGGCGTGTGACT

Flanking Amino Acid:

TVVLGTFAAQIIIVEFGGKP

Intron Amino Acid Position:

1011

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

63.1

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

66.7

0.38

0.9

60.2

35.4

Minor 5ss

25.6

-2.8

30.2

Minor BPS

42.4

-0.5

2.3

60.65

43.5

Associated Gene:

Gene:

ATP2B4

Ensembl Gene ID:

ENSAPLG00000012830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043505

2615407 - 2643216

27810

ENSAPLT00000041214

2615407 - 2630638

15232

ENSAPLT00000013459

2615786 - 2630576

14791