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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2621271_2621392_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2621271 - 2621392
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTTTCTTTCCCT
Flanking Amino Acid:
INSAYTSKILPPEKEGGLPR
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
47.8
-0
3.6
87.23
39

Associated Gene:

Gene:
ATP2B4
Ensembl Gene ID:
ENSAPLG00000012830
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013459
2615786 - 2630576
14791
ENSAPLT00000043505
2615407 - 2643216
27810
ENSAPLT00000041214
2615407 - 2630638
15232