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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2621636_2621725_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2621636 - 2621725
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACCG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGGCTCTAACC
Flanking Amino Acid:
VTISLAYSVKKMMKDNNLVR
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
65.1
40.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
71.7
0.49
0.9
65.1
36.2
Minor 5ss
26.8
-2.7
2.8
30.9
42.6
Minor BPS
51.6
0.03
1.8
62.23
43.7

Associated Gene:

Gene:
ATP2B4
Ensembl Gene ID:
ENSAPLG00000012830
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013459
2615786 - 2630576
14791
ENSAPLT00000043505
2615407 - 2643216
27810
ENSAPLT00000041214
2615407 - 2630638
15232