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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2622201_2625254_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2622201 - 2625254
Intron Length:
3054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGGGGCTGTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
GGTGTCTTATTT
Flanking Amino Acid:
EGDEEKKVKKAKTQDGVALE
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
58.2
0.19
1
49.9
39.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
53.4
0.19
1.7
68.7
42.6

Associated Gene:

Gene:
ATP2B4
Ensembl Gene ID:
ENSAPLG00000012830
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041214
2615407 - 2630638
15232