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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2626784_2627343_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2626784 - 2627343
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCCCAAAATGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCCCCCAAAA
Flanking Amino Acid:
FYHPPGGDNELCGQSSGGVE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
65.8
40.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
59.2
0.21
1
51.2
35.7
Minor 5ss
31.4
-2.1
2.8
36.4
32.8
Minor BPS
51.3
0.04
2
72.03
39

Associated Gene:

Gene:
ATP2B4
Ensembl Gene ID:
ENSAPLG00000012830
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043505
2615407 - 2643216
27810
ENSAPLT00000041214
2615407 - 2630638
15232
ENSAPLT00000013459
2615786 - 2630576
14791