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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2630577_2642943_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2630577 - 2642943
Intron Length:
12367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67.4
36.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
32.6
-2
3
30.9
43.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ATP2B4
Ensembl Gene ID:
ENSAPLG00000012830
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043505
2615407 - 2643216
27810