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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2679869_2679958_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2679869 - 2679958
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGGAT
U12 Branch Point Sequence:
GCCCCCTGCACC
Flanking Amino Acid:
PESLRSLHLQNNNIQTMHKD
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
53.7
0.09
1.6
57.1
49.4
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
46.7
-0.2
1.9
53.35
43.9

Associated Gene:

Gene:
OPTC
Ensembl Gene ID:
ENSAPLG00000014416
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015036
2679698 - 2683596
3899