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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2680423_2680528_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2680423 - 2680528
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGCGTCGA
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGGAC
U12 Branch Point Sequence:
TCTCTCCCACCA
Flanking Amino Acid:
AIRAGDFTGLKKLKRIDLTS
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.1
49.8
42.9
Major BPS
41.6
-0.5
1.5
34.5
43.7
Major PPT
74.2
0.55
0.9
67.2
34
Minor 5ss
28.3
-2.5
3
27.9
37.4
Minor BPS
43.3
-0.5
2
57.29
42

Associated Gene:

Gene:
OPTC
Ensembl Gene ID:
ENSAPLG00000014416
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015036
2679698 - 2683596
3899