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Intron Name: Anas_platyrhynchos_platyrhynchos_27_2680688_2681558_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2680688 - 2681558

Intron Length:

871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCACCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAC

U12 Branch Point Sequence:

TTCCTCTCCACC

Flanking Amino Acid:

PTSSPVRPTQGLPSCLLCLC

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

65.8

40.2

Major BPS

54.8

0.12

1.3

66.4

39.9

Major PPT

71.9

0.49

0.8

62.5

33.5

Minor 5ss

27.1

-2.6

2.9

24.3

36.8

Minor BPS

48.5

-0.1

63.43

42.2

Associated Gene:

Gene:

OPTC

Ensembl Gene ID:

ENSAPLG00000014416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015036

2679698 - 2683596

3899