Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2681680_2682028_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2681680 - 2682028

Intron Length:

349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

GCTGTGTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TCAGCCCTCACG

Flanking Amino Acid:

LYDYGDIAPKIEVGTLAPRP

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

63.9

42.4

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

75.8

0.58

68.6

42.1

Minor 5ss

23.2

-3.1

3.2

28.7

43.7

Minor BPS

45.4

-0.5

2.2

52.53

47.7

Associated Gene:

Gene:

OPTC

Ensembl Gene ID:

ENSAPLG00000014416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015036

2679698 - 2683596

3899