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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2682274_2683167_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2682274 - 2683167
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTGAG
5'SS Class:
major
3'SS Sequence:
CAAATCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTGCTTTCAGC
Flanking Amino Acid:
AGSTDGRDVSGHPAGRRMRP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.3
41.8
Major BPS
71.6
0.54
1
72
33.1
Major PPT
64
0.31
1
59.7
40.9
Minor 5ss
24.8
-2.9
3.1
21.7
37.9
Minor BPS
50.7
0.01
2.1
69.26
43

Associated Gene:

Gene:
OPTC
Ensembl Gene ID:
ENSAPLG00000014416
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015036
2679698 - 2683596
3899