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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2689607_2695462_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2689607 - 2695462
Intron Length:
5856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GCTTCCTAACCC
Flanking Amino Acid:
WLFWRERCTQANIWTMRVAF
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.1
0.59
0.8
73.7
31.3
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
54.6
0.12
2
66.71
45.1

Associated Gene:

Gene:
PRELP
Ensembl Gene ID:
ENSAPLG00000014551
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015160
2688597 - 2723991
35395