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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_27307_27812_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27307 - 27812
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTTTACTT
Flanking Amino Acid:
DLVLAEDEEMNRMHESMKLF
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
72.3
38.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91
0.92
0.7
89
27.5
Minor 5ss
42.1
-0.9
2.9
55.1
43.5
Minor BPS
63.2
0.49
1.6
78.3
39.3

Associated Gene:

Gene:
GNAI3
Ensembl Gene ID:
ENSAPLG00000023137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025578
1975 - 29054
27080