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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2769152_2769249_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2769152 - 2769249
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
CCATCCCCAACT
Flanking Amino Acid:
AIGGWNFGTAKFSTMVSTPE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
69.7
0.44
0.8
61.6
35
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
51.8
0.14
2
69.94
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016899
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008396
2768044 - 2771968
3925