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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2769654_2769984_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2769654 - 2769984
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCAAT
U12 Branch Point Sequence:
ATGTTCTCCACA
Flanking Amino Acid:
QSGYEIAELGKYLDYFNVMT
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
53
0.07
1.4
62.5
41.7
Major PPT
75.6
0.58
0.9
69.5
36.3
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
49.8
-0
2
65.38
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016899
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008396
2768044 - 2771968
3925