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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2770109_2770237_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2770109 - 2770237
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGCTTTTCGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CAGGCTTGAACT
Flanking Amino Acid:
DTDGNIYFNVDYAMNYWKSN
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
71.4
0.48
1
69.5
36.8
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
53.5
0.19
1.6
65.46
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016899
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008396
2768044 - 2771968
3925