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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2770424_2770965_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2770424 - 2770965
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
CACTCAGTAAAT
Flanking Amino Acid:
QEAGTLAYYEICTLLNSGAT
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
71.2
0.48
0.9
64
36.7
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
45.3
-0.2
2.3
63.42
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016899
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008396
2768044 - 2771968
3925