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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2774049_2774318_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2774049 - 2774318
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATATAA
5'SS Class:
major
3'SS Sequence:
CTATTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATTAT
U12 Branch Point Sequence:
ATGTCCCTATTT
Flanking Amino Acid:
NKPSDKEFFPGPGTYDTDKQ
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
66.7
35
Major BPS
63.3
0.33
1.1
54
41.2
Major PPT
82.3
0.73
0.7
81.5
30.3
Minor 5ss
36.9
-1.5
3
39.1
46.2
Minor BPS
54.7
0.22
1.9
75.04
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008250
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008560
2772102 - 2774961
2860