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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2779148_2779755_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2779148 - 2779755
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGCTCCCACCC
Flanking Amino Acid:
LFKDDVSTFPLIAARPFTVP
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.9
34.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
38.9
-1.2
3
53.8
43.7
Minor BPS
40
-0.7
2
48.06
41.7

Associated Gene:

Gene:
TAF8
Ensembl Gene ID:
ENSAPLG00000008259
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008593
2778398 - 2783725
5328