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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2780338_2780776_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2780338 - 2780776
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTACGTGAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
KRSQRMVITAPPVTNQPVTP
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.21
1.4
54.7
44.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.7
0.65
0.9
75.4
38.6
Minor 5ss
32.8
-2
3.4
43.9
44.2
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
TAF8
Ensembl Gene ID:
ENSAPLG00000008259
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008593
2778398 - 2783725
5328