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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2780840_2781128_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2780840 - 2781128
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTTTGTATTT
Flanking Amino Acid:
SDIVVTLVEMGFNVETLPAY
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
47.7
-0.1
2.2
70.13
42.3

Associated Gene:

Gene:
TAF8
Ensembl Gene ID:
ENSAPLG00000008259
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008593
2778398 - 2783725
5328