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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2798770_2801942_F

Intron Information:

Intron Rank:
129619
Intron Class:
major
Intron Phase:
Intron Coordinates:
2798770 - 2801942
Intron Length:
3173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTCTCCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
74.1
0.54
0.9
69.4
40.5
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
77.3
0.93
1.3
88.83
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019753
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028155
2797029 - 2802344
5316