Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2842055_2842968_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2842055 - 2842968

Intron Length:

914

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATTTG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTTAT

U12 Branch Point Sequence:

ATCACAAGAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

81.2

33.8

Major BPS

72.5

0.56

1.1

63.4

Major PPT

82.2

0.72

0.7

74.9

35.5

Minor 5ss

43.2

-0.7

2.9

57.8

46.8

Minor BPS

43.1

-0.5

1.9

54.02

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018838

2842009 - 2859795

17787