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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2865197_2866571_F

Intron Information:

Intron Rank:
124401
Intron Class:
major
Intron Phase:
Intron Coordinates:
2865197 - 2866571
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TGACCCTCCAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
43.6
-0.5
2.2
55.02
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017072
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029437
2864731 - 2871299
6569