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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2868640_2868728_F

Intron Information:

Intron Rank:
124398
Intron Class:
major
Intron Phase:
Intron Coordinates:
2868640 - 2868728
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
TGTCCCTGAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
74.6
0.55
0.9
66.4
40.5
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
58.1
0.25
1.7
71.35
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017072
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040314
2865906 - 2871299
5394
ENSAPLT00000029437
2864731 - 2871299
6569
ENSAPLT00000019919
2866572 - 2871299
4728