Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2869475_2869710_F

Intron Information:

Intron Rank:

124410

Intron Class:

major

Intron Phase:

Intron Coordinates:

2869475 - 2869710

Intron Length:

236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGAAAACTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

TCCCTCTGAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.2

34.9

Major BPS

78.6

0.71

79.6

32.9

Major PPT

60.2

0.23

51.5

42.3

Minor 5ss

31.9

-2.1

3.3

41.7

44.9

Minor BPS

49.9

-0

1.6

58.5

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040314

2865906 - 2871299

5394

ENSAPLT00000029437

2864731 - 2871299

6569