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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2903078_2904935_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2903078 - 2904935
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCTTGGAAC
5'SS Class:
major
3'SS Sequence:
TATTTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GTTATTTCCACG
Flanking Amino Acid:
GLELLVQSYLENPTT
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.3
57.5
44.4
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
75.6
0.58
0.9
70.7
34.7
Minor 5ss
24.8
-2.9
3.8
31.7
36.5
Minor BPS
44.4
-0.5
2
52.43
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026933
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042872
2903063 - 2905373
2311