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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2910893_2911048_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2910893 - 2911048
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
GGTGCTTAAAGC
Flanking Amino Acid:
QELYWQVAINEFAIGGSPTG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
63
38.7
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
81.7
0.71
0.7
74
31.1
Minor 5ss
36.4
-1.5
2.8
40.1
40
Minor BPS
46.1
-0.3
2
55.07
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018543
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026521
2910113 - 2912104
1992