About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2911194_2911514_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2911194 - 2911514
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
TCACCCTGAGCT
Flanking Amino Acid:
AVGAQETSYGYAVECSQIHS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
50
0
1.2
54.6
40.8
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
54.6
0.22
1.8
71.76
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018543
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026521
2910113 - 2912104
1992