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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2977047_2979099_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2977047 - 2979099
Intron Length:
2053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCAGTTTTAGCC
Flanking Amino Acid:
TLCEDLGQFVKHLNTEHALD
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.5
0.71
0.7
76.9
25.1
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
46.7
-0.2
1.6
49.59
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024889
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026278
2976761 - 2979853
3093