About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3096941_3097079_F

Intron Information:

Intron Rank:
140011
Intron Class:
major
Intron Phase:
Intron Coordinates:
3096941 - 3097079
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCCC
5'SS Class:
major
3'SS Sequence:
CTTTCCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AAATTTTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
64.3
40
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79
0.65
0.7
77.5
24.4
Minor 5ss
41.6
-0.9
2.7
54.6
42.5
Minor BPS
49.2
-0
1.5
57.27
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025260
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028731
3096893 - 3098080
1188