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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3124437_3125014_R

Intron Information:

Intron Rank:
133919
Intron Class:
major
Intron Phase:
Intron Coordinates:
3124437 - 3125014
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCGCAT
U12 Branch Point Sequence:
TTTTCCCCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
57.4
0.18
1.4
67.6
40.6
Major PPT
75
0.56
0.8
73.9
29.6
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
61.5
0.44
2
87
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019317
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043955
3124429 - 3126118
1690