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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3135835_3138297_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3135835 - 3138297
Intron Length:
2463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TGTGGCTCACCG
Flanking Amino Acid:
LTHLILLLLSASCAADNVTL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
42.8
-0.6
2.3
51.98
48.1

Associated Gene:

Gene:
TREM2
Ensembl Gene ID:
ENSAPLG00000008731
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009082
3135795 - 3143125
7331