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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3139493_3139543_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3139493 - 3139543
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCTAAGCCT
5'SS Class:
weak_major
3'SS Sequence:
ATCCATCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTCCCCATAGCA
Flanking Amino Acid:
TFLKVEPSLPADFTVFYVFG
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.3
57.6
41
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
62
0.27
1.1
60.9
34.5
Minor 5ss
18.9
-3.6
3.8
29.1
36.8
Minor BPS
48.8
-0
1.9
61.8
44.1

Associated Gene:

Gene:
TREM2
Ensembl Gene ID:
ENSAPLG00000008731
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009082
3135795 - 3143125
7331