Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3142579_3143304_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3142579 - 3143304

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCTAT

5'SS Class:

major

3'SS Sequence:

TTGTTGTCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

CTCTAATGAATC

Flanking Amino Acid:

QRIQMVVSPTEPVIIFAKKG

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

37.5

Major BPS

82.2

0.8

0.9

81.6

Major PPT

79.4

0.66

0.8

77.9

36.6

Minor 5ss

39.6

-1.2

3.1

47.1

48.3

Minor BPS

46.7

-0.2

1.9

57.28

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009180

3141521 - 3146557

5037